• Fundamental Analysis of TCGA RNA-seq Data-01

    GDAC (Genome Data Analysis Centers): It is an important consortium belonged to TCGA Research Network, the famous members include Firehose...

    bioinfostar.com/2017/12/17/Battlefield_TCGA-leve...

  • User: vinvan

    ... Hello, I'm trying to quantify the frequency of alleles at specific locations in a bam file generated by Samtools pileup using the command: samtools mpileup ...

    www.biostars.org/u/43681/

  • TCGA2STAT/getTCGA.Rd at master · cran/TCGA2STAT · ...

    Obtain TCGA data from the Broad GDAC Firehose and process the data into a format ready for statistical analysis. } \usage{ getTCGA(disease = GBM , da...

    github.com/cran/TCGA2STAT/blob/master/...

  • CCLE drug response data

    how to get Cinical drug response data from broad GDAC firehose? hi guys, Could anyone guide me on how to get clinical drug response data from TCGA ? I ...

    www.biostars.org/p/196157/

  • GitHub - RTCGA/RTCGA.miRNASeq.20160128

    Datasets existing in this package were downloaded automatically from Firehose Broad ... file. To see the manual page for included datasets run ?miRNASeq....

    github.com/RTCGA/RTCGA.miRNASeq.20...

  • TumorPortal

    We are developing a new version of Tumor Portal. You can go thereand give us some feedback.

    www.tumorportal.org

  • A systematic atlas of chaperome deregulation topologies acro...

    TCGA Research Network (), available through the Broad Institute TCGA GDAC Firehose (). Code related to analyses and Pro2 webtool as well as associated ...

    journals.plos.org/ploscompbiol/article?id=10.1371...

  • Chromosomal instability as a prognostic marker in cervical can...

    data were downloaded from the Broad GDAC Firehose (), and analyzed in the R statistical environment. CIN70 score was calculated again by summing the n...

    bmccancer.biomedcentral.com

  • Where to download latest TCGA MAF files?

    hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.broad.mit.edu.maf.txt 12.8MB 23 Jul 201... $ wget $ unzip firehose_get_latest.zip ./firehose_get -b -only Mutati...

    www.biostars.org/p/140691/

  • Example data for TCGA Workflow: Analyze cancer genomics a...

    keep.extra.columns = TRUE) save(genes_GR,genes,file = genes_GR.rda , compress = ... Download and save a subset of GBM GISTIC results from GDAC fir...

    bioconductor.org/packages/release/data/experim...

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