• firebrowse 0.1.4 : Python Package Index

    firebrowse: python bindings for the Broad Institute TCGA GDAC FireBrowse Portal. This... See the the following pages on Broad Institute TCGA GDAC Fireho...

    testpypi.python.org/pypi/firebrowse/0.1.4

  • Broad GDAC Firehose - TCGA - National Cancer Institut...

    The Broad GDAC Firehoseprovides L3 data and L4 analyses packaged in a form amenable to immediate algorithmic analysis. This enables a wide range of c...

    wiki.nci.nih.gov/display/TCGA/Broad GDAC Fireh...

  • Broad Institute GDAC Firebrowse - TCGA - National Can...

    last modified by Go to start of metadata The Broad Institute GDAC Firebrowseis a tool to explore cancer data, sitting on top of the Broad GDAC Firehose...

    wiki.nci.nih.gov/display/TCGA/Broad Institute GD...

  • Broad Firehose mRNA z-scores

    Hello, I have downloaded all the cancer types from broad's GDAC Firehose and I've unzipped. There... Use of this site constitutes acceptance of our User Agr...

    www.biostars.org/p/119155/

  • getFirehoseData error: Error in dirname(name) : path too long ...

    which is the shortest I am allowed. The name of the file I am trying to download from the Broad Institute is gdac.broadinstitute.org_LAML.Merge_methylation_...

    github.com/mksamur/RTCGAToolbox/issue...

  • Annotating TCGA MAFs with the latest Ensembl/Gencode tran...

    Firehose has a nice UI at firebrowse.org, but we'll use their command-line tool instead. T... tar -izxf - -C mafs ls -d mafs/* | perl -ne 'chomp; ($t)=m/...

    www.biostars.org/p/91806/

  • MAF specification TCGA : Variant_Classification

    I downloaded some MAF files from the Broad GDAC Firehose : Mutation_Packager_Calls_Level_3. I want to be limited to the mutations considered as functio...

    www.biostars.org/p/283799/

  • From TCGA to GDC (Genomic data commons)

    The file naming is a bit different now, but you would be able to make out. I haven't used the R library, but the Firehose site has its own client(like a wget). The...

    www.biostars.org/p/202479/

  • TumorPortal

    We are developing a new version of Tumor Portal. You can go thereand give us some feedback.

    www.tumorportal.org

  • FireBrowse

    firebrowse allows scientists to gain access to terabytes of data and close to a thousand reports

    firebrowse.org

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