• FireBrowse

    firebrowse allows scientists to gain access to terabytes of data and close to a thousand reports

    firebrowse.org

  • Broad Institute GDAC Firebrowse - TCGA - National Cancer In...

    last modified by Go to start of metadata The Broad Institute GDAC Firebrowseis a tool to explore cancer data, sitting on top of the Broad GDAC Firehose...

    wiki.nci.nih.gov/display/TCGA/Broad Institute GD...

  • Broad GDAC Firehose - TCGA - National Cancer Institute - Co...

    The Broad GDAC Firehoseprovides L3 data and L4 analyses packaged in a form amenable to immediate algorithmic analysis. This enables a wide range of c...

    wiki.nci.nih.gov/display/TCGA/Broad GDAC Fireh...

  • RTCGAToolbox: A New Tool for Exporting TCGA Firehose...

    RTCGAToolbox uses the Firehose project, one of the largest TCGA data sources operated by Broad Institute's Genome Data Analysis Center (GDAC), to ac...

    journals.plos.org/plosone/article?id=10.1371/jour...

  • Broad Firehose mRNA z-scores

    Hello, I have downloaded all the cancer types from broad's GDAC Firehose and I've unzipped. There... Use of this site constitutes acceptance of our User Agr...

    www.biostars.org/p/119155/

  • getFirehoseData error: Error in file(name, wb ) · Issue #22 · ...

    cannot open file 'gdac.broadinstitute.org_LUSC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19...

    github.com/mksamur/RTCGAToolbox/issue...

  • MAF specification TCGA : Variant_Classification

    I downloaded some MAF files from the Broad GDAC Firehose : Mutation_Packager_Calls_Level_3. I want to be limited to the mutations considered as functio...

    www.biostars.org/p/283799/

  • TCGAbiolinks/GDCprepare.Rd at master · BioinformaticsFM...

    \item{add.gistic2.mut}{If a list of genes (gene symbol) is given, columns with gistic2 results from GDAC firehose (hg19) and a column indicating if there is or ...

    github.com/BioinformaticsFMRP/TCGAbioli...

  • User: vinvan

    ... Hello, I'm trying to quantify the frequency of alleles at specific locations in a bam file generated by Samtools pileup using the command: samtools mpileup ...

    www.biostars.org/u/43681/

  • CCLE drug response data

    how to get Cinical drug response data from broad GDAC firehose? hi guys, Could anyone guide me on how to get clinical drug response data from TCGA ? I ...

    www.biostars.org/p/196157/

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