• firebrowse 0.1.4 : Python Package Index

    See the the following pages on Broad Institute TCGA GDAC Firehose pages for up-to-date release notes. By summer of 2015 FireBrowse.org will host its ow...

    testpypi.python.org/pypi/firebrowse/0.1.4

  • Broad GDAC Firehose - TCGA - National Cancer Institute - Co...

    The Broad GDAC Firehoseprovides L3 data and L4 analyses packaged in a form amenable to immediate algorithmic analysis. This enables a wide range of c...

    wiki.nci.nih.gov/display/TCGA/Broad GDAC Fireh...

  • Broad Institute GDAC Firebrowse - TCGA - National Cancer In...

    last modified by Go to start of metadata The Broad Institute GDAC Firebrowseis a tool to explore cancer data, sitting on top of the Broad GDAC Firehose...

    wiki.nci.nih.gov/display/TCGA/Broad Institute GD...

  • Broad Firehose mRNA z-scores

    Hello, I have downloaded all the cancer types from broad's GDAC Firehose and I've unzipped. There... Use of this site constitutes acceptance of our User Agr...

    www.biostars.org/p/119155/

  • User: vinvan

    ... Hello, I'm trying to quantify the frequency of alleles at specific locations in a bam file generated by Samtools pileup using the command: samtools mpileup ...

    www.biostars.org/u/43681/

  • getFirehoseData error: Error in dirname(name) : path too long ...

    which is the shortest I am allowed. The name of the file I am trying to download from the Broad Institute is gdac.broadinstitute.org_LAML.Merge_methylation_...

    github.com/mksamur/RTCGAToolbox/issue...

  • Clinical Data of GBM

    save(WHAT_YOU_NEED, file = file.path(DIRPREFIX, paste0(id, _clinical.Rdata )), com... clinical data of patients with cancer from GDAC (downloaded from ...

    www.biostars.org/p/215725/

  • MAF specification TCGA : Variant_Classification

    I downloaded some MAF files from the Broad GDAC Firehose : Mutation_Packager_Calls_Level_3. I want to be limited to the mutations considered as functio...

    www.biostars.org/p/283799/

  • TCGAbiolinks/GDCprepare.Rd at master · BioinformaticsFM...

    \item{add.gistic2.mut}{If a list of genes (gene symbol) is given, columns with gistic2 results from GDAC firehose (hg19) and a column indicating if there is or ...

    github.com/BioinformaticsFMRP/TCGAbioli...

  • FireBrowse

    firebrowse allows scientists to gain access to terabytes of data and close to a thousand reports

    firebrowse.org

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